Discovery of an Orally Bioavailable, Brain-Penetrating, in Vivo Active Phosphodiesterase 2A Inhibitor Lead Series for the Treatment of Cognitive Disorders

J Med Chem. 2017 Sep 28;60(18):7658-7676. doi: 10.1021/acs.jmedchem.7b00709. Epub 2017 Sep 11.

Abstract

Herein, we describe the discovery of a potent, selective, brain-penetrating, in vivo active phosphodiesterase (PDE) 2A inhibitor lead series. To identify high-quality leads suitable for optimization and enable validation of the physiological function of PDE2A in vivo, structural modifications of the high-throughput screening hit 18 were performed. Our lead generation efforts revealed three key potency-enhancing functionalities with minimal increases in molecular weight (MW) and no change in topological polar surface area (TPSA). Combining these structural elements led to the identification of 6-methyl-N-((1R)-1-(4-(trifluoromethoxy)phenyl)propyl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (38a), a molecule with the desired balance of preclinical properties. Further characterization by cocrystal structure analysis of 38a bound to PDE2A uncovered a unique binding mode and provided insights into its observed potency and PDE selectivity. Compound 38a significantly elevated 3',5'-cyclic guanosine monophosphate (cGMP) levels in mouse brain following oral administration, thus validating this compound as a useful pharmacological tool and an attractive lead for future optimization.

MeSH terms

  • Administration, Oral
  • Animals
  • Brain / drug effects*
  • Brain / metabolism
  • Cognition Disorders / drug therapy
  • Cognition Disorders / enzymology
  • Cognition Disorders / metabolism
  • Cyclic GMP / metabolism
  • Cyclic Nucleotide Phosphodiesterases, Type 2 / antagonists & inhibitors*
  • Cyclic Nucleotide Phosphodiesterases, Type 2 / metabolism
  • Drug Discovery
  • Humans
  • Male
  • Mice
  • Mice, Inbred ICR
  • Molecular Docking Simulation
  • Phosphodiesterase Inhibitors / administration & dosage
  • Phosphodiesterase Inhibitors / chemistry
  • Phosphodiesterase Inhibitors / pharmacokinetics*
  • Phosphodiesterase Inhibitors / pharmacology*
  • Pyrimidines / administration & dosage
  • Pyrimidines / chemistry
  • Pyrimidines / pharmacokinetics*
  • Pyrimidines / pharmacology*
  • Rats

Substances

  • Phosphodiesterase Inhibitors
  • Pyrimidines
  • Cyclic Nucleotide Phosphodiesterases, Type 2
  • PDE2A protein, human
  • Cyclic GMP